Neanderthal Genetic Diversity Halved 110,000 Years Ago, Study Finds

March 3, 2025
4 mins read
A lifelike model of a Neanderthal. Photo Source: Neil Howard.
A lifelike model of a Neanderthal. Photo Source: Neil Howard.

A new study published in Nature Communications has uncovered evidence that Neanderthals experienced a severe population crash around 110,000 years ago, which may have set the stage for their eventual extinction. This finding challenges previous assumptions about Neanderthal evolution and provides fresh insights into the demographic history of our closest evolutionary relatives.

Researchers from Binghamton University, the University of Alcalá, and the Institut Català de Paleontologia Miquel Crusafont led the international team that made this discovery by examining a unique feature of Neanderthal fossils: the semicircular canals of the inner ear.

“The development of the inner ear structures is known to be under very tight genetic control, since they are fully formed at the time of birth,” explained Professor Rolf Quam from Binghamton University. “This makes variation in the semicircular canals an ideal proxy for studying evolutionary relationships between species in the past.”

Geographic location of the studied samples. Photo Source: Alessandro Urcioli.

The team analyzed 30 Neanderthal specimens spanning nearly 400,000 years of evolution. They compared 13 “pre-Neanderthal” fossils from Spain’s Atapuerca site (dating to 430,000 years ago), 10 early Neanderthals from Croatia’s Krapina site (about 130,000 years old), and seven “classic” Neanderthals from France, Belgium, and Israel (64,000 to 40,000 years old).

The results showed a striking reduction in the diversity of semicircular canal shapes between the early Krapina Neanderthals and the later classic Neanderthals. This decreased variation reflects a loss of genetic diversity within the Neanderthal population, technically known as a genetic bottleneck.

“The reduction in diversity observed between the Krapina sample and classic Neanderthals is especially striking and clear, providing strong evidence of a bottleneck event,” said Mercedes Conde-Valverde, director of the Cátedra de Otoacústica Evolutiva at HM Hospitales and the University of Alcalá.

What makes this finding particularly interesting is that it aligns with previous research based on ancient DNA, which had also suggested a genetic bottleneck around 110,000 years ago. The timing coincides with significant climate changes in Europe, suggesting environmental factors may have played a role in reducing Neanderthal populations.

Indicating a reduction in genetic variation, during Neanderthal evolution. Photo Source: Binghamton.edu.

Surprisingly, the study found similar levels of genetic diversity between the oldest pre-Neanderthal samples and the early Neanderthals from Krapina. This challenges the previously held idea that Neanderthals experienced a population bottleneck at the beginning of their evolution.

“We were surprised to find that the pre-Neanderthals from the Sima de los Huesos exhibited a level of morphological diversity similar to that of the early Neanderthals from Krapina,” said Alessandro Urciuoli, lead author of the study. “This challenges the common assumption of a bottleneck event at the origin of the Neanderthal lineage.”

The research suggests that Neanderthal populations remained relatively stable and diverse for hundreds of thousands of years before experiencing a sudden decline around 110,000 years ago. This population crash would have made Neanderthals more vulnerable to environmental changes, disease, and competition from other human species.


Similar Posts


The study represents a methodological breakthrough as well. While ancient DNA analysis has previously helped identify genetic bottlenecks, this research demonstrates how inner ear morphology can be used to track population history – a valuable approach for older fossil samples where DNA preservation is poor or nonexistent.

For Brian Keeling, a graduate student at Binghamton University involved in the study, the project offered an exciting opportunity to be part of cutting-edge research. “As a student of human evolution, I am always amazed at research that pushes the boundaries of our knowledge,” Keeling remarked.

This new understanding of Neanderthal demographic history provides important context for their eventual extinction around 40,000 years ago. The genetic bottleneck 110,000 years ago may have left Neanderthals ill-equipped to handle subsequent challenges, foreshadowing their disappearance from the fossil record tens of thousands of years later.

Frequently Asked Questions

What is a genetic bottleneck and why is it significant for Neanderthals? A genetic bottleneck occurs when a population experiences a sudden reduction in size, leading to decreased genetic diversity. For Neanderthals, the bottleneck discovered around 110,000 years ago meant they had fewer genetic variations to draw from, making them less adaptable to environmental changes, more susceptible to disease, and generally more vulnerable to extinction.
How did researchers determine that Neanderthals experienced a population crash? Researchers analyzed the semicircular canals in the inner ear of Neanderthal fossils. These structures form before birth and are under tight genetic control, making them ideal for tracking genetic diversity. The team found significantly less variation in these structures among later Neanderthals compared to earlier ones, indicating a loss of genetic diversity around 110,000 years ago.
What caused the Neanderthal population crash 110,000 years ago? While the exact cause isn’t definitively proven, the timing coincides with significant climate changes in Europe. Environmental shifts likely played a major role in reducing Neanderthal populations. Evidence of population turnover among European Neanderthals may have further contributed to their decline in numbers and genetic diversity.
How does this discovery change our understanding of Neanderthal evolution? This study challenges the previously held belief that Neanderthals experienced a genetic bottleneck at the beginning of their evolution. Instead, it shows that Neanderthal populations remained stable and diverse for hundreds of thousands of years before experiencing a sudden decline around 110,000 years ago, long before their final extinction.
Why did researchers study inner ear bones instead of just using DNA? Inner ear structures provide an excellent proxy for genetic diversity, especially in older fossils where DNA preservation is poor or nonexistent. The semicircular canals are fully formed at birth and don’t change during life, making them ideal for tracking evolutionary relationships. This method allows researchers to study specimens that are too old for reliable DNA analysis.
Did this population bottleneck directly cause Neanderthal extinction? The population crash didn’t directly cause their extinction, which happened about 70,000 years later. However, the reduced genetic diversity likely made Neanderthals more vulnerable to later challenges such as climate change, competition with modern humans, and diseases. The bottleneck can be seen as an early warning sign of their eventual extinction rather than its immediate cause.

Govind Tekale

Embarking on a new journey post-retirement, Govind, once a dedicated teacher, has transformed his enduring passion for current affairs and general knowledge into a conduit for expression through writing. His historical love affair with reading, which borders on addiction, has evolved into a medium to articulate his thoughts and disseminate vital information. Govind pens down his insights on a myriad of crucial topics, including the environment, wildlife, energy, sustainability, and health, weaving through every aspect that is quintessential for both our existence and that of our planet. His writings not only mirror his profound understanding and curiosity but also serve as a valuable resource, offering a deep dive into issues that are critical to our collective future and well-being.

Leave a Reply

Your email address will not be published.

Representative Image. Glenmark building, blue glass facade. Photo Source: Glenmark Pharma.
Previous Story

Glenmark Recalls 1.5M ADHD Drug Bottles Over Carcinogen Risk

Representative Image: Flooded street in Perth, Australia.
Next Story

Cyclone Alfred Approaches Brisbane, AFL Opener in Jeopardy

Latest from Archaeology

Representative Image. An ancient scroll laid out on a wooden table. Photo Source - Ooligan (CC BY-SA 2.0)

AI Deciphers 2,000-Year-Old Herculaneum Scroll

Artificial intelligence has helped scientists read words from a scroll sealed for 2,000 years. This scroll, carbonized into a lump of charcoal by volcanic heat, holds secrets from the Roman town of
Left: Fragments of sinew bowstrings from the Cave of Los Murciélagos in Albuñol, the oldest bowstrings found so far in Europe. Right above: Three Neolithic arrows reed and wood and details of tied sinew fibres, feathers and birch bark pitch. Right down: Cave of Los Murciélagos (Albuñol, Granada). © MUTERMUR Project.

7,000-Year-Old Bowstrings Unearthed in Spain

The Cave of Los Murciélagos in Albuñol, Granada has produced Europe’s oldest known bowstrings, dating back to 5300-4900 BCE. The discovery challenges previous assumptions about Neolithic technological capabilities and raises questions about

Don't Miss

Representative Image: a humanoid robot leaning over an elderly woman who is lying in bed. The scene conveys a futuristic or sci-fi concept, possibly illustrating AI or robotics in elderly care, human-robot interaction, or ethical dilemmas in healthcare automation. Photo Source: CC Null (CC BY-2.0 DE)

Japan’s 150-kg AI Robot AIREC Tackles Elderly Care Worker Shortage

Japan’s innovative AI-powered robot AIREC represents a major